recipe fsa

FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.

Homepage:

http://fsa.sourceforge.net/

License:

GPL-3

Recipe:

/fsa/meta.yaml

Links:

doi: 10.1371/journal.pcbi.1000392

package fsa

(downloads) docker_fsa

versions:

1.15.9-4,  1.15.9-3,  1.15.9-2,  1.15.9-1,  1.15.9-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fsa

and update with::

   mamba update fsa

To create a new environment, run:

mamba create --name myenvname fsa

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fsa:<tag>

(see `fsa/tags`_ for valid values for ``<tag>``)

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Link to this page

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