recipe fsm-lite

Frequency-based String Mining (lite)

Homepage

https://github.com/nvalimak/fsm-lite

License

GPL / GPL-3

Recipe

/fsm-lite/meta.yaml

Links

doi: 10.1038/ncomms12797

A single-core implemetation of frequency-based substring mining. Used to count k-mers in populations of genomes (supplied as fasta files).

package fsm-lite

Versions

1.0-1, 1.0-0

Depends

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• sdsl-lite

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fsm-lite

and update with:

conda update fsm-lite

or use the docker container:

docker pull quay.io/biocontainers/fsm-lite:<tag>

(see fsm-lite/tags for valid values for <tag>)

Link to this page

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