recipe fsm-lite

Frequency-based String Mining (lite)

Homepage:

https://github.com/nvalimak/fsm-lite

License:

GPL / GPL-3

Recipe:

/fsm-lite/meta.yaml

Links:

doi: 10.1038/ncomms12797

A single-core implemetation of frequency-based substring mining. Used to count k-mers in populations of genomes (supplied as fasta files).

package fsm-lite

Versions:

1.0-3,  1.0-2,  1.0-1,  1.0-0

Depends:

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• sdsl-lite

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install fsm-lite

and update with:

conda update fsm-lite

or use the docker container:

docker pull quay.io/biocontainers/fsm-lite:<tag>

(see fsm-lite/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fsm-lite/README.html)