recipe fsnviz

Tool for plotting gene fusion events detected by various tools using Circos.

Homepage:

https://github.com/bow/fsnviz

License:

BSD / BSD

Recipe:

/fsnviz/meta.yaml

package fsnviz

versions:

0.3.0-6,  0.3.0-5,  0.3.0-4,  0.3.0-3,  0.3.0-2,  0.3.0-1,  0.3.0-0,  0.2.0-1,  0.2.0-0, 

0.3.0-6,  0.3.0-5,  0.3.0-4,  0.3.0-3,  0.3.0-2,  0.3.0-1,  0.3.0-0,  0.2.0-1,  0.2.0-0,  0.1.0-1,  0.1.0-0

depends circos:

>=0.69.2

depends click:

>=6.6

depends crimson:

>=1.1.0

depends jinja2:

2.9.5

depends python:

>=3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fsnviz

and update with::

   mamba update fsnviz

To create a new environment, run:

mamba create --name myenvname fsnviz

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fsnviz:<tag>

(see `fsnviz/tags`_ for valid values for ``<tag>``)

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