recipe fuc

Frequently used commands in bioinformatics

Homepage:

https://github.com/sbslee/fuc

Documentation:

https://sbslee-fuc.readthedocs.io/en/latest/

License:

MIT / MIT

Recipe:

/fuc/meta.yaml

package fuc

versions:

0.38.0-0,  0.37.0-0,  0.36.0-0,  0.35.0-0,  0.34.0-0,  0.33.1-0,  0.32.0-0,  0.31.0-0,  0.30.0-0, 

0.38.0-0,  0.37.0-0,  0.36.0-0,  0.35.0-0,  0.34.0-0,  0.33.1-0,  0.32.0-0,  0.31.0-0,  0.30.0-0,  0.29.0-0,  0.28.0-0,  0.27.0-0,  0.26.0-0,  0.25.0-0,  0.24.0-0,  0.23.0-0,  0.22.0-0,  0.21.0-0,  0.20.0-0,  0.19.0-0,  0.18.0-0,  0.17.0-0,  0.16.0-0,  0.15.0-0,  0.14.0-0,  0.13.0-0,  0.12.0-0,  0.11.0-0,  0.10.0-0,  0.9.0-0,  0.8.0-0,  0.7.0-0

depends biopython:

depends lxml:

depends matplotlib-base:

depends matplotlib-venn:

depends numpy:

depends pandas:

depends pyranges:

depends pysam:

depends python:

depends scipy:

depends seaborn:

depends statsmodels:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fuc

and update with::

   mamba update fuc

To create a new environment, run:

mamba create --name myenvname fuc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fuc:<tag>

(see `fuc/tags`_ for valid values for ``<tag>``)

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