recipe fufihla

HLA typing pipeline for long reads (FuFiHLA) with a location-aware CLI.

Homepage:

https://github.com/jingqing-hu/FuFiHLA

License:

MIT

Recipe:

/fufihla/meta.yaml

package fufihla

versions:

0.1.0-0

depends bcftools:

depends htslib:

depends longcalld:

depends minimap2:

depends python:

depends samtools:

depends seqtk:

depends unzip:

depends wget:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fufihla

and update with::

   mamba update fufihla

To create a new environment, run:

mamba create --name myenvname fufihla

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fufihla:<tag>

(see `fufihla/tags`_ for valid values for ``<tag>``)

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