recipe fununifrac

A repository to implement UniFrac, but on functional profiles of metagenomic data.

Homepage:

https://github.com/KoslickiLab/FunUniFrac

License:

BSD / BSD-3-Clause

Recipe:

/fununifrac/meta.yaml

package fununifrac

versions:

0.0.1-0

depends blist:

depends networkx:

2.8.4.*

depends numpy:

1.23.2.*

depends pandas:

1.4.3.*

depends pyemd:

0.5.1.*

depends pytest:

depends python:

depends requests:

depends scipy:

1.8.0.*

depends seaborn:

depends sparse:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fununifrac

and update with::

   mamba update fununifrac

To create a new environment, run:

mamba create --name myenvname fununifrac

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fununifrac:<tag>

(see `fununifrac/tags`_ for valid values for ``<tag>``)

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