recipe fwdpy11

Forward-time population genetic simulation in Python.

Homepage:

https://github.com/molpopgen/fwdpy11

Documentation:

https://molpopgen.github.io/fwdpy11

License:

GPL3 / GPL-3.0-or-later

Recipe:

/fwdpy11/meta.yaml

Links:

doi: 10.1534/genetics.114.165019, doi: 10.1371/journal.pcbi.1006581

package fwdpy11

versions:

0.24.3-1,  0.24.3-0,  0.24.2-0,  0.24.1-0,  0.24.0-0,  0.23.0-0,  0.22.2-1,  0.22.2-0,  0.21.0-0, 

0.24.3-1,  0.24.3-0,  0.24.2-0,  0.24.1-0,  0.24.0-0,  0.23.0-0,  0.22.2-1,  0.22.2-0,  0.21.0-0,  0.20.1-0,  0.20.0-2,  0.20.0-1,  0.20.0-0,  0.19.10-0,  0.19.9-0,  0.19.7-0,  0.19.6-0,  0.19.3-0,  0.19.2-0,  0.19.1-0,  0.18.3-0,  0.18.2-0,  0.18.1-0,  0.17.1-2,  0.17.1-1,  0.17.1-0,  0.17.0-0,  0.16.2-0,  0.16.1-0,  0.16.0-0,  0.15.2-0,  0.15.1-0,  0.15.0-0,  0.13.2-1,  0.13.2-0,  0.12.0-0,  0.11.0-1,  0.11.0-0,  0.10.1-0,  0.10.0-0,  0.9.0-1,  0.9.0-0,  0.8.3-0,  0.8.2-0,  0.8.1-0,  0.8.0-0,  0.7.1-0,  0.7.0-0,  0.6.4-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.5-0,  0.5.4-0,  0.5.3-0,  0.5.2-0,  0.5.1-0,  0.5.0-0,  0.4.5-1,  0.4.5-0,  0.4.4-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.2-0,  0.3.1-0,  0.2.1-0,  0.1.4-2,  0.1.4-1,  0.1.4-0,  0.1.3.post3-0,  0.1.3.post1-0,  0.1.3a1-0,  0.1.3a0-0,  0.1.2-0,  0.1.1-0,  0.1.post4-0,  0.1.post2-0

depends attrs:

depends black:

depends demes:

>=0.2.2

depends deprecated:

depends gsl:

>=2.7,<2.8.0a0

depends intervaltree:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends numpy:

<2.0

depends openblas:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends scipy:

depends tskit:

>=0.5.6

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fwdpy11

and update with::

   mamba update fwdpy11

To create a new environment, run:

mamba create --name myenvname fwdpy11

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fwdpy11:<tag>

(see `fwdpy11/tags`_ for valid values for ``<tag>``)

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