- recipe gaas
Suite of tools related to Genome Assembly Annotation Service tasks at NBIS.
- package gaas¶
- depends libdb:
- depends perl:
- depends perl-bio-eutilities:
- depends perl-bioperl:
- depends perl-clone:
- depends perl-extutils-makemaker:
- depends perl-file-share:
- depends perl-file-sharedir-install:
- depends perl-graph:
- depends perl-lwp-simple:
- depends perl-sort-naturally:
- depends perl-statistics-r:
- depends r-base:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install gaas and update with:: mamba update gaas
To create a new environment, run:
mamba create --name myenvname gaas
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/gaas:<tag> (see `gaas/tags`_ for valid values for ``<tag>``)