recipe galaxy-data

The Galaxy models, datatype framework, and datatype implementations.

Homepage:

https://galaxyproject.org

Documentation:

https://docs.galaxyproject.org

Developer docs:

https://github.com/galaxyproject/galaxy

License:

AFL-3.0

Recipe:

/galaxy-data/meta.yaml

Links:

biotools: galaxy, doi: 10.1093/nar/gky379

package galaxy-data

versions:

24.1.4-0,  24.1.3-0,  24.1.2-0,  24.1.1-0,  22.1.1-0,  21.9.0-0,  20.9.1-2,  20.9.1-1,  20.9.1-0

depends alembic:

depends alembic-utils:

depends bdbag:

>=1.6.3

depends bx-python:

depends dnspython:

depends email-validator:

depends galaxy-files:

>=24.1

depends galaxy-objectstore:

>=24.1

depends galaxy-schema:

>=24.1

depends galaxy-tool-util:

>=24.1

depends galaxy-util:

>=24.1

depends galaxy_sequence_utils:

depends h5grove:

>=1.2.1

depends h5py:

depends isa-rwval:

>=0.10.10

depends markupsafe:

depends mrcfile:

depends msal:

depends numpy:

depends parsley:

depends pycryptodome:

depends pydantic:

>=2.7.4

depends pysam:

>=0.21

depends python:

>=3.8

depends python-isal:

depends python-magic:

depends social-auth-core:

4.0.3

depends sqlalchemy:

>=2.0,<2.1

depends tifffile:

depends typing-extensions:

depends webob:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install galaxy-data

and update with::

   mamba update galaxy-data

To create a new environment, run:

mamba create --name myenvname galaxy-data

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/galaxy-data:<tag>

(see `galaxy-data/tags`_ for valid values for ``<tag>``)

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