recipe galru

Rapid spoligotyping for Mycobacterium tuberculosis directly from long read sequencing

Homepage:

https://github.com/quadram-institute-bioscience/galru

License:

GPL3

Recipe:

/galru/meta.yaml

package galru

Versions:

1.0.0-0,  0.0.2-1,  0.0.2-0

Depends:

• bedtools

• biopython >=1.68

• blast

• cd-hit

• minced

• minimap2

• mlst

• ncbi-genome-download

• pyfastaq >=3.12

• python >=3

• pyyaml

• samtools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install galru

and update with:

conda update galru

or use the docker container:

docker pull quay.io/biocontainers/galru:<tag>

(see galru/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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