recipe gambit

Tool for rapid taxonomic identification of microbial pathogens

Homepage:

https://github.com/jlumpe/gambit

Documentation:

https://gambit-genomics.readthedocs.io/en/latest

License:

AGPL-3.0-or-later

Recipe:

/gambit/meta.yaml

GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking) is a tool for rapid taxonomic identification of microbial pathogens. It uses an extremely efficient genomic distance metric along with a curated database of approximately 50,000 reference genomes (derived from NCBI RefSeq) to identify unknown bacterial genomes within seconds.

package gambit

(downloads) docker_gambit

Versions:

1.0.0-00.5.1-00.5.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gambit

and update with:

conda update gambit

or use the docker container:

docker pull quay.io/biocontainers/gambit:<tag>

(see gambit/tags for valid values for <tag>)

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