- recipe gambit
Tool for rapid taxonomic identification of microbial pathogens
- Homepage:
- Documentation:
- License:
AGPL-3.0-or-later
- Recipe:
GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking) is a tool for rapid taxonomic identification of microbial pathogens. It uses an extremely efficient genomic distance metric along with a curated database of approximately 50,000 reference genomes (derived from NCBI RefSeq) to identify unknown bacterial genomes within seconds.
- package gambit¶
-
- Versions:
1.0.0-0
,0.5.1-0
,0.5.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install gambit
and update with:
conda update gambit
or use the docker container:
docker pull quay.io/biocontainers/gambit:<tag>
(see gambit/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/gambit/README.html)