recipe ganon

ganon2 classifies genomic sequences against large sets of references efficiently,



MIT / MIT License




doi: 10.1101/406017

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

package ganon

(downloads) docker_ganon



depends bzip2:


depends coreutils:

depends curl:

depends diffutils:

depends genome_updater:


depends grep:

depends libgcc-ng:


depends libstdcxx-ng:


depends libzlib:


depends multitax:


depends pandas:


depends python:


depends python_abi:

3.10.* *_cp310

depends raptor:


depends seqan3:


depends zlib:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ganon

and update with::

   mamba update ganon

To create a new environment, run:

mamba create --name myenvname ganon

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `ganon/tags`_ for valid values for ``<tag>``)

Download stats