recipe ganon

ganon: a read classification tool using Interleaved Bloom Filters

Homepage

https://github.com/pirovc/ganon

License

MIT / MIT License

Recipe

/ganon/meta.yaml

Links

doi: 10.1101/406017

ganon is a k-mer based read classification tool which uses Interleaved Bloom Filters in conjunction with a taxonomic clustering and a k-mer counting-filtering scheme

package ganon

Versions

0.3.4-0,  0.3.3-1,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.3-0,  0.2.2-0,  0.2.1-0, 

0.3.4-0,  0.3.3-1,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.3-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.5-1,  0.1.5-0,  0.1.4-0,  0.1.3-1,  0.1.3-0,  0.1.2-0

Depends

• coreutils

• curl >=7.71.1,<8.0a0

• gawk

• grep

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• pandas >=0.22.0

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• tar

• taxsbp 1.0.0

• wget

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ganon

and update with:

conda update ganon

or use the docker container:

docker pull quay.io/biocontainers/ganon:<tag>

(see ganon/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ganon/README.html)