recipe ganon

ganon: a read classification tool using Interleaved Bloom Filters

Homepage

https://github.com/pirovc/ganon

License

MIT / MIT License

Recipe

/ganon/meta.yaml

Links

doi: 10.1101/406017

ganon is a k-mer based read classification tool which uses Interleaved Bloom Filters in conjunction with a taxonomic clustering and a k-mer counting-filtering scheme

package ganon

Versions

0.2.0-0, 0.1.5-1, 0.1.5-0, 0.1.4-0, 0.1.3-1, 0.1.3-0, 0.1.2-0

Depends

• coreutils

• gawk

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• pandas

• python >=3.4

• taxsbp 0.1.2

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ganon

and update with:

conda update ganon

or use the docker container:

docker pull quay.io/biocontainers/ganon:<tag>

(see ganon/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ganon/README.html)