recipe ganon

ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently

Homepage:

https://github.com/pirovc/ganon

License:

MIT / MIT License

Recipe:

/ganon/meta.yaml

Links:

doi: 10.1101/406017

ganon classifies short DNA sequences against large sets of genomic sequences efficiently, with download and update of references (RefSeq/Genbank), taxonomic (NCBI/GTDB) and hierarchical classification, customized reporting and more

package ganon

Versions:

1.2.0-0,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.0-0,  0.4.1-0,  0.4.0-1,  0.4.0-0, 

1.2.0-0,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.0-0,  0.4.1-0,  0.4.0-1,  0.4.0-0,  0.3.4-0,  0.3.3-1,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.3-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.5-1,  0.1.5-0,  0.1.4-0,  0.1.3-1,  0.1.3-0,  0.1.2-0

Depends:

• bzip2 >=1.0.8,<2.0a0

• coreutils

• genome_updater 0.5.1

• grep

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.12,<1.3.0a0

• multitax 1.1.1

• pandas >=1.1.0

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• zlib >=1.2.12,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ganon

and update with:

conda update ganon

or use the docker container:

docker pull quay.io/biocontainers/ganon:<tag>

(see ganon/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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