recipe gapfiller

GapFiller is a seed-and-extend local assembler to fill the gap within paired reads.

Homepage:

https://sourceforge.net/projects/gapfiller

License:

GPL / GPLv3

Recipe:

/gapfiller/meta.yaml

package gapfiller

versions:

2.1.2-4,  2.1.2-3,  2.1.2-2,  2.1.2-1,  2.1.1-0

depends boost-cpp:

>=1.74.0,<1.74.1.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends zlib:

>=1.2.13,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gapfiller

and update with::

   mamba update gapfiller

To create a new environment, run:

mamba create --name myenvname gapfiller

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gapfiller:<tag>

(see `gapfiller/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gapfiller/README.html)