recipe gargammel-slim

Tool for simulating ancient DNA datasets

Homepage:

https://github.com/grenaud/gargammel

License:

GPL-3.0-only

Recipe:

/gargammel-slim/meta.yaml

This a stripped version of Gargammel that only builds the programs fragSim, deamSim and adptSim. For a full Gargammel installation look at the gargammel package

package gargammel-slim

versions:

1.1.2-5,  1.1.2-4,  1.1.2-3,  1.1.2-2,  1.1.2-1,  1.1.2-0

depends bamtools:

>=2.5.2,<2.6.0a0

depends gsl:

>=2.7,<2.8.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gargammel-slim

and update with::

   mamba update gargammel-slim

To create a new environment, run:

mamba create --name myenvname gargammel-slim

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gargammel-slim:<tag>

(see `gargammel-slim/tags`_ for valid values for ``<tag>``)

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