recipe garnett-cli

Collection of wrapper scripts for the Garnett scRNAseq cell type classification tool.

Homepage:

https://github.com/ebi-gene-expression-group/garnett-cli

License:

Apache / Apache-2.0

Recipe:

/garnett-cli/meta.yaml

package garnett-cli

Versions:

0.0.5-1,  0.0.5-0,  0.0.4-0,  0.0.3-2,  0.0.3-1,  0.0.3-0,  0.0.2-0,  0.0.1-0,  v0.0.1-0

Depends:

• bioconductor-org.hs.eg.db

• bioconductor-org.mm.eg.db

• monocle3-cli 0.0.7.*

• r-garnett 0.2.8.*

• r-glmnet 2.0_18.*

• r-optparse

• r-workflowscriptscommon

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install garnett-cli

and update with:

conda update garnett-cli

or use the docker container:

docker pull quay.io/biocontainers/garnett-cli:<tag>

(see garnett-cli/tags for valid values for <tag>)

Download stats

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