Package Recipe 'gatk4'

recipe gatk4

Genome Analysis Toolkit (GATK4)

Homepage: https://www.broadinstitute.org/gatk/
Developer docs: https://github.com/broadinstitute/gatk
License: BSD / BSD-3-Clause
Recipe: /gatk4/meta.yaml

package gatk4¶

Versions

4.2.0.0-0, 4.1.9.0-0, 4.1.8.1-0, 4.1.8.0-0, 4.1.7.0-0, 4.1.6.0-0, 4.1.5.0-1, 4.1.5.0-0, 4.1.4.1-1,

4.2.0.0-0, 4.1.9.0-0, 4.1.8.1-0, 4.1.8.0-0, 4.1.7.0-0, 4.1.6.0-0, 4.1.5.0-1, 4.1.5.0-0, 4.1.4.1-1, 4.1.4.1-0, 4.1.4.0-1, 4.1.4.0-0, 4.1.3.0-0, 4.1.2.0-1, 4.1.2.0-0, 4.1.1.0-0, 4.1.0.0-0, 4.0.12.0-0, 4.0.11.0-0, 4.0.10.0-0, 4.0.9.0-0, 4.0.8.1-0, 4.0.7.0-0, 4.0.6.0-0, 4.0.5.2-0, 4.0.5.1-0, 4.0.4.0-0, 4.0.3.0-1, 4.0.3.0-0, 4.0.2.1-0, 4.0.2.0-0, 4.0.1.2-0, 4.0.1.1-0, 4.0.1.0-0, 4.0.0.0-0, 4.0b6-0, 4.0b5-0, 4.0b4-0, 4.0b3-0, 4.0b2-0, 4.0b1-0, 4.0a1.2.7.2-2

Depends

openjdk >=8,<9
python

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gatk4

and update with:

conda update gatk4

or use the docker container:

docker pull quay.io/biocontainers/gatk4:<tag>

(see gatk4/tags for valid values for <tag>)

package gatk4-spark¶

Versions

4.2.0.0-0, 4.1.9.0-0, 4.1.8.1-0, 4.1.8.0-0, 4.1.7.0-0, 4.1.6.0-0, 4.1.5.0-1, 4.1.5.0-0, 4.1.4.1-1,

4.2.0.0-0, 4.1.9.0-0, 4.1.8.1-0, 4.1.8.0-0, 4.1.7.0-0, 4.1.6.0-0, 4.1.5.0-1, 4.1.5.0-0, 4.1.4.1-1, 4.1.4.1-0, 4.1.4.0-1, 4.1.4.0-0, 4.1.3.0-0, 4.1.2.0-1

Depends

gatk4 4.2.0.0 0
openjdk >=8,<9
python

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gatk4-spark

and update with:

conda update gatk4-spark

or use the docker container:

docker pull quay.io/biocontainers/gatk4-spark:<tag>

(see gatk4-spark/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gatk4/README.html)