recipe gdsctools

Set of tools and pipelines to analyse GDSC data (cancerrxgene.org)

Homepage:

http://pypi.python.org/pypi/gdsctools

License:

BSD / BSD

Recipe:

/gdsctools/meta.yaml

package gdsctools

versions:

1.0.1-1,  1.0.1-0,  0.20.1-0,  0.19.0-0

depends biokit:

0.4.1

depends colorlog:

depends colormap:

1.0.1

depends easydev:

>=0.9.34

depends jinja2:

depends matplotlib:

>=1.4.3

depends numexpr:

depends numpy:

depends pandas:

0.20.1

depends python:

depends reports:

0.3.1

depends scikit-learn:

0.18.2

depends scipy:

0.19.1

depends statsmodels:

0.8.0

depends xlrd:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gdsctools

and update with::

   mamba update gdsctools

To create a new environment, run:

mamba create --name myenvname gdsctools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gdsctools:<tag>

(see `gdsctools/tags`_ for valid values for ``<tag>``)

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