recipe gem3-mapper

The GEM read mapper (v3).

Homepage:

https://github.com/smarco/gem3-mapper

License:

GPL-3.0

Recipe:

/gem3-mapper/meta.yaml

Links:

doi: 10.1038/nmeth.2221, biotools: GEM_Mapper

package gem3-mapper

versions:

3.6.1-13,  3.6.1-12,  3.6.1-11,  3.6.1-10,  3.6.1-9,  3.6.1-8,  3.6.1-7,  3.6.1-6,  3.6.1-5, 

3.6.1-13,  3.6.1-12,  3.6.1-11,  3.6.1-10,  3.6.1-9,  3.6.1-8,  3.6.1-7,  3.6.1-6,  3.6.1-5,  3.6.1-4,  3.6.1-3,  3.6.1-2,  3.6.1-1,  3.6.1-0

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gem3-mapper

and update with::

   mamba update gem3-mapper

To create a new environment, run:

mamba create --name myenvname gem3-mapper

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gem3-mapper:<tag>

(see `gem3-mapper/tags`_ for valid values for ``<tag>``)

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