recipe genbank_to

genbank_to: convert genbank files to a swath of other formats

Homepage:

https://github.com/linsalrob/genbank_to

License:

MIT / MIT

Recipe:

/genbank_to/meta.yaml

Links:

doi: 10.5281/zenodo.6465821

package genbank_to

versions:

0.42-0,  0.41-0,  0.35-0

depends bcbio-gff:

depends biopython:

depends pandas:

depends python:

>=3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genbank_to

and update with::

   mamba update genbank_to

To create a new environment, run:

mamba create --name myenvname genbank_to

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/genbank_to:<tag>

(see `genbank_to/tags`_ for valid values for ``<tag>``)

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