recipe genblastg

genBlast is a program suite, consisting of two programs: genBlastA and genBlastG. genBlastA parses local alignments, or high-scoring segment pairs (HSPs) produced by local sequence alignment programs such as BLAST and WU-BLAST and identify groups of HSPs.

Homepage:

http://genome.sfu.ca/genblast/download.html

License:

GNU

Recipe:

/genblastg/meta.yaml

package genblastg

(downloads) docker_genblastg

versions:

1.39-1,  1.38-5,  1.38-4,  1.38-3,  1.38-2,  1.38-1,  1.38-0

depends blast:

depends libgcc:

depends zlib:

1.2.11*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genblastg

and update with::

   mamba update genblastg

To create a new environment, run:

mamba create --name myenvname genblastg

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/genblastg:<tag>

(see `genblastg/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/genblastg/README.html)