recipe gencove

Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis. This command-line interface can be used to easily access the Gencove API.

Homepage:

https://docs.gencove.com

Developer docs:

https://github.com/gncv/gencove-cli

License:

Apache-2.0

Recipe:

/gencove/meta.yaml

package gencove

versions:

2.8.1-0,  2.8.0-0,  2.7.3-0,  2.7.2-0,  2.7.1-0,  2.7.0-0,  2.6.0-0,  2.5.2-0,  2.5.1-0, 

2.8.1-0,  2.8.0-0,  2.7.3-0,  2.7.2-0,  2.7.1-0,  2.7.0-0,  2.6.0-0,  2.5.2-0,  2.5.1-0,  2.5.0-0,  2.4.7-0,  2.4.6-0,  2.4.5-0,  2.4.3-0

depends backoff:

1.11.0

depends boto3:

>=1.17.97

depends click:

>=7.0

depends progressbar2:

3.55.0

depends pydantic:

1.9.2

depends pytest-runner:

depends python:

>=3.7

depends python-dateutil:

>=2.2.0

depends requests:

>=2.19.1

depends six:

>=1.5

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gencove

and update with::

   mamba update gencove

To create a new environment, run:

mamba create --name myenvname gencove

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gencove:<tag>

(see `gencove/tags`_ for valid values for ``<tag>``)

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