recipe genera

Uncovering gene-family founder events during major evolutionary transitions in animals, plants and fungi using GenEra

Homepage:

https://github.com/josuebarrera/GenEra

License:

GPL3 / GPL-3.0-or-later

Recipe:

/genera/meta.yaml

package genera

versions:

1.4.2-0

depends absense:

>=1.0.1

depends diamond:

>=2.1.10

depends foldseek:

3.915ef7d.*

depends mmseqs2:

14.7e284.*

depends ncbitax2lin:

>=2.3.2

depends orthofinder:

2.5.5.*

depends python:

>=3.8,<3.9

depends r-bio3d:

2.4_3.*

depends r-optparse:

1.7.3.*

depends r-phytools:

>=0.6_99

depends r-seqinr:

4.2_16.*

depends r-tidyverse:

1.3.2.*

depends scipy:

1.7.3.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genera

and update with::

   mamba update genera

To create a new environment, run:

mamba create --name myenvname genera

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/genera:<tag>

(see `genera/tags`_ for valid values for ``<tag>``)

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