recipe genewalk

Determine gene function based on network embeddings.




BSD / BSD-2-Clause



package genewalk

(downloads) docker_genewalk



depends gensim:


depends goatools:

depends matplotlib-base:

depends networkx:


depends numpy:

depends pandas:

depends plotly:


depends python:

depends scipy:


depends seaborn:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genewalk

and update with::

   mamba update genewalk

To create a new environment, run:

mamba create --name myenvname genewalk

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `genewalk/tags`_ for valid values for ``<tag>``)

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