recipe genie

A toolkit for working with next-generation sequencing data

Homepage:

https://github.com/sakkayaphab/genie

License:

MIT / MIT

Recipe:

/genie/meta.yaml

Genie is a collection of tools for a wide-range of genomics analysis tasks. Genie provides a fast and flexible toolkit for reading, writing, and manipulating data.

package genie

(downloads) docker_genie

versions:

0.7.0-0,  0.6.0-0,  0.5.0-1,  0.5.0-0,  0.4.2-1,  0.4.2-0,  0.4.1-0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genie

and update with::

   mamba update genie

To create a new environment, run:

mamba create --name myenvname genie

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/genie:<tag>

(see `genie/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/genie/README.html)