recipe genmod

Annotate genetic inheritance models in variant files

Homepage:

http://github.com/moonso/genmod

License:

MIT / MIT

Recipe:

/genmod/meta.yaml

package genmod

versions:

3.9-0,  3.8.3-0,  3.8.2-0,  3.8.1-0,  3.8.0-0,  3.7.4-0

depends click:

>=8.1.3

depends configobj:

depends extract_vcf:

>=0.4.2

depends interval_tree:

>=0.3.2

depends intervaltree:

depends ped_parser:

>=1.6.2

depends pytabix:

depends pytest:

depends python:

3.8.*

depends vcftoolbox:

>=1.5.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genmod

and update with::

   mamba update genmod

To create a new environment, run:

mamba create --name myenvname genmod

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/genmod:<tag>

(see `genmod/tags`_ for valid values for ``<tag>``)

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