recipe genome_updater

genome_updater: bash script to download and update snapshots of the NCBI genomes

Homepage

https://github.com/pirovc/genome_updater

License

MIT / MIT License

Recipe

/genome_updater/meta.yaml

Bash script to download and update snapshots of the NCBI genomes (refseq/genbank) keeping all files and detailed log for each update, with file integrity check (MD5) and parallel download support.

package genome_updater

(downloads) docker_genome_updater

Versions

0.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install genome_updater

and update with:

conda update genome_updater

or use the docker container:

docker pull quay.io/biocontainers/genome_updater:<tag>

(see genome_updater/tags for valid values for <tag>)