recipe genomestrip

Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovery and genotyping of structural variation using whole-genome sequencing data






package genomestrip

(downloads) docker_genomestrip



depends htslib:

depends openjdk:


depends r-base:


depends samtools:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genomestrip

and update with::

   mamba update genomestrip

To create a new environment, run:

mamba create --name myenvname genomestrip

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `genomestrip/tags`_ for valid values for ``<tag>``)

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