recipe genometreetk

The genome tree toolkit is a collection of methods for working with genome trees.






package genometreetk

(downloads) docker_genometreetk



depends biolib:


depends blast:

depends dendropy:


depends easel:

depends fastani:


depends fasttree:

depends future:

depends hmmer:


depends infernal:

depends mash:

depends mothur:

depends numpy:


depends python:


depends scipy:


depends ssu-align:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genometreetk

and update with::

   mamba update genometreetk

To create a new environment, run:

mamba create --name myenvname genometreetk

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `genometreetk/tags`_ for valid values for ``<tag>``)

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