recipe genomic_regions

Consistently handle genomic regions

Homepage:

https://github.com/vaquerizaslab/genomic_regions

Documentation:

https://vaquerizaslab.github.io/genomic_regions

License:

MIT

Recipe:

/genomic_regions/meta.yaml

package genomic_regions

versions:

0.0.10-0,  0.0.9-0

depends future:

depends intervaltree:

depends numpy:

depends pandas:

depends pybedtools:

>=0.8.0

depends pybigwig:

depends pysam:

depends python:

>=3.6

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genomic_regions

and update with::

   mamba update genomic_regions

To create a new environment, run:

mamba create --name myenvname genomic_regions

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/genomic_regions:<tag>

(see `genomic_regions/tags`_ for valid values for ``<tag>``)

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