recipe geofetch

Downloads data and metadata from GEO and SRA and creates standard PEPs.

Homepage:

https://github.com/pepkit/geofetch/

Documentation:

http://geofetch.databio.org/

License:

BSD / BSD-2-Clause

Recipe:

/geofetch/meta.yaml

package geofetch

versions:

0.12.7-0,  0.12.6-0,  0.12.5-0,  0.12.4-0,  0.12.3-0,  0.12.2-0,  0.12.1-0,  0.12.0-0,  0.11.2-0, 

0.12.7-0,  0.12.6-0,  0.12.5-0,  0.12.4-0,  0.12.3-0,  0.12.2-0,  0.12.1-0,  0.12.0-0,  0.11.2-0,  0.11.1-0,  0.11.0-0

depends attmap:

>=0.1.8

depends colorama:

>=0.3.9

depends coloredlogs:

>=15.0.1

depends logmuse:

>=0.2.6

depends pandas:

>=1.3.5

depends peppy:

>=0.35.1

depends piper:

>=0.12.3

depends python:

>=3.8

depends requests:

>=2.28.1

depends rich:

>=12.5.1

depends ubiquerg:

>=0.6.0

depends xmltodict:

>=0.13.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install geofetch

and update with::

   mamba update geofetch

To create a new environment, run:

mamba create --name myenvname geofetch

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/geofetch:<tag>

(see `geofetch/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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