recipe geosketch

Geometry-preserving random sampling.

Homepage:

https://github.com/brianhie/geosketch

License:

MIT / MIT

Recipe:

/geosketch/meta.yaml

Links:

doi: 10.1016/j.cels.2019.05.003

package geosketch

versions:

1.3-0,  1.2-0,  1.1-0,  1.0-0

depends fbpca:

>=1

depends numpy:

>=1.12

depends python:

>=3.6

depends scikit-learn:

>=0.24

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install geosketch

and update with::

   mamba update geosketch

To create a new environment, run:

mamba create --name myenvname geosketch

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/geosketch:<tag>

(see `geosketch/tags`_ for valid values for ``<tag>``)

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