recipe get_homologues

A versatile software package for pan-genome analysis, including GET_HOMOLOGUES and GET_HOMOLOGUES-EST

Homepage:

https://github.com/eead-csic-compbio/get_homologues

License:

GPL3 / GPL-3.0-or-later

Recipe:

/get_homologues/meta.yaml

Links:

biotools: get_homologues, doi: https://doi.org/10.1128/AEM.02411-13, doi: https://doi.org/10.3389/fpls.2017.00184, doi: https://doi.org/10.1007/978-1-4939-1720-4_14, doi: https://doi.org/10.1007/978-1-0716-2429-6_9

package get_homologues

(downloads) docker_get_homologues

versions:

3.7.2-0,  3.7.1-0,  3.6.3-0,  3.6.2-0,  3.6.1-0,  3.5.5-0,  3.5.4-0,  3.5.1-0

depends blast:

depends cogtriangles:

depends diamond:

depends hmmer:

depends mcl:

depends perl:

depends perl-gd:

depends phylip:

depends r-ape:

depends r-base:

depends r-dendextend:

depends r-factoextra:

depends r-gplots:

depends wget:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install get_homologues

and update with::

   mamba update get_homologues

To create a new environment, run:

mamba create --name myenvname get_homologues

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/get_homologues:<tag>

(see `get_homologues/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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