recipe get_mnv

Tool to identify Multi-Nucleotide Variants (MNVs) in genomic sequences.

Homepage:

https://github.com/PathoGenOmics-Lab/get_mnv

License:

GPL3 / GPL-3.0-or-later

Recipe:

/get_mnv/meta.yaml

get_MNV is a tool designed to identify Multi-Nucleotide Variants (MNVs) within the same codon in genomic sequences, providing more accurate annotation for genomic data.

package get_mnv

versions:

1.0.0-1,  1.0.0-0

depends bzip2:

>=1.0.8,<2.0a0

depends curl:

>=8.8.0,<9.0a0

depends htslib:

>=1.21,<1.22.0a0

depends htslib:

>=1.21,<2.0a0

depends libzlib:

>=1.2.13,<2.0a0

depends openssl:

>=3.3.2,<4.0a0

depends xz:

>=5.2.6,<6.0a0

depends zlib:

>=1.2.13,<2.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install get_mnv

and update with::

   mamba update get_mnv

To create a new environment, run:

mamba create --name myenvname get_mnv

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/get_mnv:<tag>

(see `get_mnv/tags`_ for valid values for ``<tag>``)

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