recipe get_orfs

Fast extraction of ORFs in all possible translation tables

Homepage:

https://github.com/linsalrob/get_orfs

License:

MIT / MIT

Recipe:

/get_orfs/meta.yaml

package get_orfs

(downloads) docker_get_orfs

versions:

1.1.0-01.0.0-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends pthread-stubs:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install get_orfs

and update with::

   mamba update get_orfs

To create a new environment, run:

mamba create --name myenvname get_orfs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/get_orfs:<tag>

(see `get_orfs/tags`_ for valid values for ``<tag>``)

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