recipe gfa1

gfa1 toolkit

Homepage:

https://github.com/lh3/gfa1

License:

GPL3

Recipe:

/gfa1/meta.yaml

Links:

biotools: gfa1

A command-line tool as well as a library in C that parses, validates and transforms assembly graphs in a dialect of the GFA1 format.

package gfa1

(downloads) docker_gfa1

versions:

0.53.alpha-3,  0.53.alpha-2,  0.53.alpha-1,  0.53.alpha-0

depends libgcc:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gfa1

and update with::

   mamba update gfa1

To create a new environment, run:

mamba create --name myenvname gfa1

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gfa1:<tag>

(see `gfa1/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gfa1/README.html)