recipe gff3sort

A Perl Script to sort gff3 files and produce suitable results for tabix tools

Homepage:

https://github.com/billzt/gff3sort

License:

GNU General Public License v3.0

Recipe:

/gff3sort/meta.yaml

package gff3sort

(downloads) docker_gff3sort

versions:

0.1.a1a2bc9-2,  0.1.a1a2bc9-1,  0.1.a1a2bc9-0

depends perl:

depends perl-data-match:

depends perl-sort-naturally:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gff3sort

and update with::

   mamba update gff3sort

To create a new environment, run:

mamba create --name myenvname gff3sort

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gff3sort:<tag>

(see `gff3sort/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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