recipe gff3toddbj

Create a DDBJ annotation file from GFF3 and FASTA files

Homepage:

https://github.com/yamaton/gff3toddbj

License:

GPL3 / GPL-3.0-only

Recipe:

/gff3toddbj/meta.yaml

package gff3toddbj

versions:

0.4.0-0,  0.3.0-0,  0.2.4-0,  0.2.3-0,  0.2.1-0,  0.1.1-0

depends bcbio-gff:

>=0.6.6

depends biopython:

>=1.75

depends pysam:

depends python:

depends samtools:

depends toml:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gff3toddbj

and update with::

   mamba update gff3toddbj

To create a new environment, run:

mamba create --name myenvname gff3toddbj

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gff3toddbj:<tag>

(see `gff3toddbj/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gff3toddbj/README.html)