gff3toembl

downloads

Submitting annotated genomes to EMBL is a very difficult and time consuming process. This software converts GFF3 files from the most commonly use prokaryote annotation tool Prokka into a format that is suitable for submission to EMBL. It has been used to prepare more than 30% of all annotated genomes in EMBL/GenBank.

Home https://github.com/sanger-pathogens/gff3toembl/
Versions 1.1.4
License GNU GENERAL PUBLIC LICENSE
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/gff3toembl

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gff3toembl

and update with:

conda update gff3toembl

docker

A Docker container is available at https://quay.io/repository/biocontainers/gff3toembl.