recipe gff3toembl

Submitting annotated genomes to EMBL is a very difficult and time consuming process. This software converts GFF3 files from the most commonly use prokaryote annotation tool Prokka into a format that is suitable for submission to EMBL. It has been used to prepare more than 30% of all annotated genomes in EMBL/GenBank.

Homepage

https://github.com/sanger-pathogens/gff3toembl/

License

GNU GENERAL PUBLIC LICENSE

Recipe

/gff3toembl/meta.yaml

package gff3toembl

(downloads) docker_gff3toembl

Versions

1.1.4-1, 1.1.4-0

Depends genometools-genometools

Depends python

Depends six

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gff3toembl

and update with:

conda update gff3toembl

or use the docker container:

docker pull quay.io/biocontainers/gff3toembl:<tag>

(see gff3toembl/tags for valid values for <tag>)