recipe gfflu

Annotate Influenza A virus gene segment sequences and output GFF3 files.

Homepage:

https://github.com/CFIA-NCFAD/gfflu

License:

MIT

Recipe:

/gfflu/meta.yaml

package gfflu

versions:

0.0.2-0,  0.0.1-0

depends bcbio-gff:

depends biopython:

depends blast:

depends miniprot:

depends polars:

depends python:

>=3.8

depends rich:

depends typer:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gfflu

and update with::

   mamba update gfflu

To create a new environment, run:

mamba create --name myenvname gfflu

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gfflu:<tag>

(see `gfflu/tags`_ for valid values for ``<tag>``)

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