recipe gffutils

Work with GFF and GTF files in a flexible database framework

Homepage:

https://github.com/daler/gffutils

Documentation:

http://daler.github.io/gffutils/

License:

MIT / MIT

Recipe:

/gffutils/meta.yaml

Links:

biotools: GFFutils

package gffutils

versions:

0.13-0,  0.12-1,  0.12-0,  0.11.1-0,  0.11.0-0,  0.10.1-1,  0.10.1-0,  0.9-1,  0.9-0, 

0.13-0,  0.12-1,  0.12-0,  0.11.1-0,  0.11.0-0,  0.10.1-1,  0.10.1-0,  0.9-1,  0.9-0,  0.8.7.1-2,  0.8.7.1-1,  0.8.7.1-0,  0.8.7-0,  0.8.6.1-0

depends argcomplete:

>=1.9.4

depends argh:

>=0.26.2

depends pyfaidx:

>=0.5.5.2

depends python:

depends simplejson:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gffutils

and update with::

   mamba update gffutils

To create a new environment, run:

mamba create --name myenvname gffutils

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gffutils:<tag>

(see `gffutils/tags`_ for valid values for ``<tag>``)

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