recipe gffutils

Work with GFF and GTF files in a flexible database framework

Homepage:

https://github.com/daler/gffutils

Documentation:

http://daler.github.io/gffutils/

License:

MIT / MIT

Recipe:

/gffutils/meta.yaml

Links:

biotools: GFFutils

package gffutils

Versions:

0.11.1-0,  0.11.0-0,  0.10.1-1,  0.10.1-0,  0.9-1,  0.9-0,  0.8.7.1-2,  0.8.7.1-1,  0.8.7.1-0, 

0.11.1-0,  0.11.0-0,  0.10.1-1,  0.10.1-0,  0.9-1,  0.9-0,  0.8.7.1-2,  0.8.7.1-1,  0.8.7.1-0,  0.8.7-0,  0.8.6.1-0

Depends:

• argcomplete >=1.9.4

• argh >=0.26.2

• pyfaidx >=0.5.5.2

• python

• simplejson

• six >=1.12.0

Required By:

• cblaster

• asgal

• clinker-py

• liftofftools

• targqc

• feature_merge

• kipoiseq

• liftoff

• pygenometracks

• rnaquast

• pypgatk

• panaroo

• biopython.convert

• corekaburra

• jcvi

• chado-tools

• metaseq

• riboloco

• isoquant

• labrat

• ultraheatmap

• ggcaller

• ultra_bioinformatics

• outrigger

• ncbi-datasets-pylib

• gffmunger

• bcbio-nextgen

• collect-columns

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gffutils

and update with:

conda update gffutils

or use the docker container:

docker pull quay.io/biocontainers/gffutils:<tag>

(see gffutils/tags for valid values for <tag>)

Download stats

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