recipe ghost-tree

ghost-tree is a bioinformatics tool that combines sequence data from two genetic marker databases into one phylogenetic tree that can be used for diversity analyses.

Homepage:

https://github.com/JTFouquier/ghost-tree

License:

BSD license

Recipe:

/ghost-tree/meta.yaml

package ghost-tree

versions:

0.2.2-1,  0.2.2-0

depends click:

>=4.0

depends fasttree:

depends muscle:

depends numpy:

depends python:

>=3.4

depends scikit-bio:

>=0.5.1

depends sumaclust:

>=1.0.31

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ghost-tree

and update with::

   mamba update ghost-tree

To create a new environment, run:

mamba create --name myenvname ghost-tree

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ghost-tree:<tag>

(see `ghost-tree/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ghost-tree/README.html)