recipe ghostx

GHOSTX is a homology search tool which can detect remote homologues like BLAST and is about 100 times more efficient than BLAST by using suffix arrays. GHOSTX outputs search results in the format similar to BLAST-tabular format.

Homepage:

http://www.bi.cs.titech.ac.jp/ghostx/

License:

BSD-2-Clause

Recipe:

/ghostx/meta.yaml

Links:

doi: 10.1371/journal.pone.0103833

package ghostx

(downloads) docker_ghostx

versions:

1.3.7-1,  1.3.7-0

depends libgcc-ng:

>=4.9

depends libstdcxx-ng:

>=4.9

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ghostx

and update with::

   mamba update ghostx

To create a new environment, run:

mamba create --name myenvname ghostx

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ghostx:<tag>

(see `ghostx/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ghostx/README.html)