recipe gifrop

Identify, classify, and cluster genomic islands from roary pangenomes

Homepage

https://github.com/jtrachsel/gifrop

License

GPL2

Recipe

/gifrop/meta.yaml

package gifrop

Versions

0.0.9-0,  0.0.6-1,  0.0.6-0,  0.0.5-0,  0.0.4-0,  0.0.1-0

Depends

• abricate >=1.0.0

• bioconductor-biostrings

• bioconductor-bsgenome

• parallel

• prokka >=1.14.6

• r-base >=3.6

• r-digest

• r-dplyr >=1.0.0

• r-ggplot2

• r-igraph

• r-paralleldist

• r-purrr

• r-readr

• r-tibble

• r-tidyr

• roary >=3.13.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gifrop

and update with:

conda update gifrop

or use the docker container:

docker pull quay.io/biocontainers/gifrop:<tag>

(see gifrop/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gifrop/README.html)