recipe gifrop

Identify, classify, and cluster genomic islands from roary pangenomes

Homepage:

https://github.com/jtrachsel/gifrop

License:

GPL2

Recipe:

/gifrop/meta.yaml

package gifrop

Versions:

0.0.9-0,  0.0.6-1,  0.0.6-0,  0.0.5-0,  0.0.4-0,  0.0.1-0

Depends:

• abricate >=1.0.0

• bioconductor-biostrings

• bioconductor-bsgenome

• parallel

• prokka >=1.14.6

• r-base >=3.6

• r-digest

• r-dplyr >=1.0.0

• r-ggplot2

• r-igraph

• r-paralleldist

• r-purrr

• r-readr

• r-tibble

• r-tidyr

• roary >=3.13.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gifrop

and update with:

conda update gifrop

or use the docker container:

docker pull quay.io/biocontainers/gifrop:<tag>

(see gifrop/tags for valid values for <tag>)

Download stats

Link to this page

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