recipe glimmerhmm

GlimmerHMM is a gene finder based on a Generalized Hidden Markov Model (GHMM).

Homepage:

https://ccb.jhu.edu/software/glimmerhmm

License:

Artistic License

Recipe:

/glimmerhmm/meta.yaml

Links:

biotools: glimmer-hmm, doi: 10.1093/bioinformatics/bth315

package glimmerhmm

(downloads) docker_glimmerhmm

versions:

3.0.4-9,  3.0.4-8,  3.0.4-7,  3.0.4-5,  3.0.4-3,  3.0.4-2,  3.0.4-1,  3.0.4-0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install glimmerhmm

and update with::

   mamba update glimmerhmm

To create a new environment, run:

mamba create --name myenvname glimmerhmm

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/glimmerhmm:<tag>

(see `glimmerhmm/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/glimmerhmm/README.html)