recipe gmap-fusion

GMAP-fusion is a utility for identifying candidate fusion transcripts based on transcript sequences reconstructed via RNA-Seq de novo transcriptome assembly.

Homepage

https://github.com/GMAP-fusion/GMAP-fusion

License

BSD-3-Clause

Recipe

/gmap-fusion/meta.yaml

package gmap-fusion

(downloads) docker_gmap-fusion

Versions

0.4.0-0, 0.3.0-1

Depends bowtie2

>=2.1

Depends gmap

>=2017.11.15

Depends perl

5.22.0*

Depends perl-db-file

Depends perl-set-intervaltree

Depends samtools

>=1.3

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gmap-fusion

and update with:

conda update gmap-fusion

or use the docker container:

docker pull quay.io/biocontainers/gmap-fusion:<tag>

(see gmap-fusion/tags for valid values for <tag>)