Package Recipe 'gmap-fusion'

recipe gmap-fusion

GMAP-fusion is a utility for identifying candidate fusion transcripts based on transcript sequences reconstructed via RNA-Seq de novo transcriptome assembly.

Homepage:: https://github.com/GMAP-fusion/GMAP-fusion
License:: BSD-3-Clause
Recipe:: /gmap-fusion/meta.yaml

package gmap-fusion¶

Versions:

0.4.0-2, 0.4.0-0, 0.3.0-1

Depends:

bowtie2 >=2.1
gmap >=2017.11.15
perl
perl-db-file
perl-set-intervaltree
samtools >=1.3

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gmap-fusion

and update with:

conda update gmap-fusion

or use the docker container:

docker pull quay.io/biocontainers/gmap-fusion:<tag>

(see gmap-fusion/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gmap-fusion/README.html)