recipe gmap

Genomic mapping and alignment program for mRNA and EST sequences.

Homepage:

http://research-pub.gene.com/gmap

License:

APACHE / Apache-2.0

Recipe:

/gmap/meta.yaml

Links:

biotools: gmap, biotools: gsnap, doi: 10.1093/bioinformatics/bti310, doi: 10.1093/bioinformatics/btq057

package gmap

(downloads) docker_gmap

versions:
2025.04.19-0,  2025.04.18-0,  2024.11.20-3,  2024.11.20-2,  2024.11.20-1,  2024.11.20-0,  2024.10.20-0,  2024.10.10-0,  2024.09.18-0, 

2025.04.19-0,  2025.04.18-0,  2024.11.20-3,  2024.11.20-2,  2024.11.20-1,  2024.11.20-0,  2024.10.20-0,  2024.10.10-0,  2024.09.18-0,  2024.08.14-0,  2024.05.20-0,  2024.05.07-0,  2024.03.15-2,  2024.03.15-1,  2024.03.15-0,  2024.02.22-0,  2023.12.01-0,  2023.10.10-1,  2023.10.10-0,  2023.10.01-0,  2023.07.20-1,  2023.07.20-0,  2023.06.01-0,  2023.04.28-1,  2023.04.28-0,  2023.03.24-1,  2023.03.24-0,  2021.08.25-2,  2021.08.25-1,  2021.08.25-0,  2021.05.27-0,  2021.03.08-0,  2021.02.22-3,  2021.02.22-1,  2021.02.22-0,  2020.10.14-0,  2020.06.30-0,  2020.06.01-1,  2020.06.01-0,  2020.04.08-1,  2020.04.08-0,  2019.09.12-1,  2019.09.12-0,  2019.06.10-0,  2019.02.26-0,  2018.07.04-0,  2018.03.25-2,  2018.03.25-1,  2018.03.25-0,  2017.11.15-4,  2017.11.15-3,  2017.11.15-2,  2017.11.15-1,  2017.11.15-0,  2017.10.30-6,  2017.10.30-5,  2017.10.30-4,  2017.10.30-3,  2017.10.30-2,  2017.10.30-1,  2017.10.30-0,  2017.09.30-7,  2017.09.30-6,  2017.09.30-5,  2017.09.30-4,  2017.09.30-3,  2017.09.30-2,  2017.09.30-1,  2017.09.30-0,  2017.05.08-6,  2017.05.08-5,  2017.05.08-4,  2017.05.08-3,  2017.05.08-2,  2017.05.08-1,  2017.05.08-0,  2017.02.15-3,  2017.02.15-2,  2017.02.15-1,  2016.09.23-3,  2016.09.23-2,  2016.09.23-1,  2016.09.23-0,  2015.12.31-5,  2015.12.31-4,  2015.12.31-3,  2015.12.31-2,  2015.12.31-1,  2015.12.31-0,  2015.09.10-2,  2015.09.10-1,  2015.09.10-0,  2014.12.28-6,  2014.12.28-5,  2014.12.23-6,  2014.12.23-5,  2014.12.23-4,  2014.12.23-3,  2014.12.23-2,  2014.12.23-1

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends perl-file-util:

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gmap

and update with::

   mamba update gmap

To create a new environment, run:

mamba create --name myenvname gmap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gmap:<tag>

(see `gmap/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gmap/README.html)