recipe gmcloser

GMcloser fills and closes the gaps present in scaffold assemblies, especially those generated by the de novo assembly of whole genomes with next-generation sequencing (NGS) reads.

Homepage

https://sourceforge.net/projects/gmcloser/

License

GPL / GPL v3

Recipe

/gmcloser/meta.yaml

package gmcloser

Versions

1.6.2-1,  1.6.2-0

Depends

• blast

• bowtie2

• mummer

• perl

• perl-findbin

• perl-getopt-long

• perl-pod-usage

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gmcloser

and update with:

conda update gmcloser

or use the docker container:

docker pull quay.io/biocontainers/gmcloser:<tag>

(see gmcloser/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gmcloser/README.html)