recipe goatools

Python scripts to find enrichment of GO terms

Homepage:

https://github.com/tanghaibao/goatools

License:

BSD / BSD-2-Clause

Recipe:

/goatools/meta.yaml

Links:

doi: 10.5281/zenodo.31628

package goatools

(downloads) docker_goatools

versions:
1.2.3-2,  1.2.3-0,  1.1.12-0,  1.1.6-0,  1.1.5-0,  1.0.15-0,  1.0.14-0,  1.0.13-0,  1.0.11-0, 

1.2.3-2,  1.2.3-0,  1.1.12-0,  1.1.6-0,  1.1.5-0,  1.0.15-0,  1.0.14-0,  1.0.13-0,  1.0.11-0,  1.0.6-1,  1.0.6-0,  1.0.5-0,  1.0.3-0,  1.0.2-0,  0.9.9-0,  0.9.7-0,  0.9.5-0,  0.8.12-0,  0.8.11-0,  0.8.9-0,  0.8.4-0,  0.7.11-1,  0.7.11-0,  0.6.10-0,  0.6.4-0,  0.5.9-0

depends numpy:

depends pydot:

depends pygraphviz:

depends python:

depends python-wget:

depends requests:

depends scipy:

depends statsmodels:

depends xlsxwriter:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install goatools

and update with::

   mamba update goatools

To create a new environment, run:

mamba create --name myenvname goatools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/goatools:<tag>

(see `goatools/tags`_ for valid values for ``<tag>``)

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