recipe goetia

streaming de Bruijn graph compaction and sketching.

Homepage:

https://github.com/camillescott/goetia

License:

MIT

Recipe:

/goetia/meta.yaml

package goetia

versions:

0.14-1,  0.14-0,  0.13-0

depends blessings:

depends clangdev:

depends cppyy:

>=1.5.5

depends curio:

depends jsonschema:

depends libgcc-ng:

>=7.5.0

depends libstdcxx-ng:

>=7.5.0

depends numpy:

depends openmp:

depends py-cpuinfo:

depends pyfiglet:

depends python:

>=3.6,<3.7.0a0

depends python_abi:

3.6.* *_cp36m

depends screed:

depends sourmash:

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install goetia

and update with::

   mamba update goetia

To create a new environment, run:

mamba create --name myenvname goetia

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/goetia:<tag>

(see `goetia/tags`_ for valid values for ``<tag>``)

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