recipe gottcha2

Genomic Origin Through Taxonomic CHAllenge (GOTTCHA) v2

Homepage:

https://github.com/poeli/GOTTCHA2

License:

BSD / BSD-3-Clause

Recipe:

/gottcha2/meta.yaml

Links:

biotools: gottcha2

package gottcha2

versions:

2.1.8.6-0,  2.1.8.5p1-0

depends biom-format:

>=2.1.7

depends gawk:

depends minimap2:

>=2.17

depends numpy:

depends pandas:

depends python:

>=3.6

depends requests:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gottcha2

and update with::

   mamba update gottcha2

To create a new environment, run:

mamba create --name myenvname gottcha2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gottcha2:<tag>

(see `gottcha2/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

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